xydist: Distance or dissimilarity between relative abundance vectors...
In mikemc/phyloseqpp: Phyloseq extensions and improvements
Description
Distance or dissimilarity between relative abundance vectors x and y
Usage
1
Arguments
method
: distance/dissimilarity measure
trim
: should x and y be reduced to their common positive elements
before computing the Aitchison distance (otherwise, the distance will be
Inf)
method == "aitchison" -> Aitchison distance
method == "bray" -> Bray-Curtis dissimilarity between x and y. Note,
converts x and y to proportions before computing.
Bray method is equal to vegan::vegdist(rbind(close_elts(x), close_elts(y)))[1]
mikemc/phyloseqpp documentation built on Nov. 4, 2019, 6:54 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Distance or dissimilarity between relative abundance vectors x and y
Usage
1 |
Arguments
method |
: distance/dissimilarity measure |
trim |
: should x and y be reduced to their common positive elements before computing the Aitchison distance (otherwise, the distance will be Inf) method == "aitchison" -> Aitchison distance method == "bray" -> Bray-Curtis dissimilarity between x and y. Note, converts x and y to proportions before computing. Bray method is equal to |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.