map.Nmix.resi: Mapping of residuals
In mikemeredith/AHMbook: Functions and Data for the Book 'Applied Hierarchical Modeling in Ecology' Vols 1 and 2
View source: R/plot-Nmix-resi&map-Nmix-resi_AHM1_6-9-3_plotting.R
map.Nmix.resi R Documentation
Mapping of residuals
Description
Produces a map of the mean residuals from an N-mixture model fit by function pcount in unmarked. Used in AHM1 - 6.9.3 to produce maps of Switzerland with the residuals for each site.
Usage
map.Nmix.resi(fm, x, y)
Arguments
fm
the fitted model object
x
x coordinates of each site
y
y coordinates of each site
Value
None. Used for its plotting side effects.
Note
In previous versions, the defaults were x = tits$coordx and y = tits$coordy, but those defaults only worked if the data object tits was in the workspace. To run the code on page 263 of AHM1, you now need to specify the coordinates, eg, map.Nmix.resi(fm5, x = tits$coordx, y = tits$coordy).
Author(s)
Marc Kéry & Andy Royle
References
Kéry, M. & Royle, J.A. (2016) Applied Hierarchical Modeling in Ecology AHM1 - 6.9.3.
mikemeredith/AHMbook documentation built on Dec. 5, 2022, 12:58 p.m.
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View source: R/plot-Nmix-resi&map-Nmix-resi_AHM1_6-9-3_plotting.R
| map.Nmix.resi | R Documentation |
Mapping of residuals
Description
Produces a map of the mean residuals from an N-mixture model fit by function pcount in unmarked. Used in AHM1 - 6.9.3 to produce maps of Switzerland with the residuals for each site.
Usage
map.Nmix.resi(fm, x, y)
Arguments
fm |
the fitted model object |
x |
x coordinates of each site |
y |
y coordinates of each site |
Value
None. Used for its plotting side effects.
Note
In previous versions, the defaults were x = tits$coordx and y = tits$coordy, but those defaults only worked if the data object tits was in the workspace. To run the code on page 263 of AHM1, you now need to specify the coordinates, eg, map.Nmix.resi(fm5, x = tits$coordx, y = tits$coordy).
Author(s)
Marc Kéry & Andy Royle
References
Kéry, M. & Royle, J.A. (2016) Applied Hierarchical Modeling in Ecology AHM1 - 6.9.3.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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