Files in mikeod38/MF.matR
Takes mirofluidics data and does stuff with it
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
MF.matR.Rproj
NAMESPACE
R/.DS_Store
R/GetStripeProp.R
R/Import.WL.data.R
R/Prism_scatter.R
R/Speed_curve_4xParallel.R
R/WLmult_dauer_res.R
R/WriteStripeProp.R
R/Y_mat.R
R/beh_mat.R
R/beh_mat_tidy.R
R/beh_merge_all.R
R/beh_merge_all_tidy.R
R/curve.angle.R
R/dir_mat.R
R/dir_mat_tidy.R
R/exp.fit.all.log.lin.R
R/fix_reversals.R
R/getAmpVdelF.R
R/lingrad_mirror.R
R/max_delta.R
R/max_negdelta.R
R/melt_matData.R
R/merge_FIJI_data.R
R/norm_beh_enter.R
R/norm_beh_enter_3stripe.R
R/norm_beh_exit.R
R/norm_beh_exit_3stripe.R
R/plotAvgResidency.R
R/plotGCaMP_multi.R
R/plotResidency_stripes.R
R/plot_Residency.R
R/plot_Residency_overlay.R
R/plot_heatmap.R
R/plot_speedFood.R
R/plot_stateProbs.R
R/pulse_amplitudes.R
R/read_binsize.R
R/register_movie.R
R/spd_mat_tidy.R
R/x_mat_tidy.R
R/y_mat_tidy.R
README.Rmd
README.md
Rplot.jpeg
data/.DS_Store
data/state_probs_byAssayLoop.csv
extdata/.DS_Store
extdata/Ca_imaging/.DS_Store
extdata/Ca_imaging/imageJ_format/.DS_Store
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_1/.DS_Store
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_1/2017-10-07_N2_OP50_ASH_Glycerol_1_ImageJ_data.csv
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_1/2017-10-07_N2_OP50_ASH_Glycerol_1_background_results.csv
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_1/2017-10-07_N2_OP50_ASH_Glycerol_1_neuron_results.csv
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_2/.DS_Store
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_2/2017-10-07_N2_OP50_ASH_Glycerol_2_ImageJ_data.csv
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_2/2017-10-07_N2_OP50_ASH_Glycerol_2_background_results.csv
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_2/2017-10-07_N2_OP50_ASH_Glycerol_2_neuron_results.csv
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_3/.DS_Store
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_3/2017-10-07_N2_OP50_ASH_Glycerol_3_ImageJ_data.csv
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_3/2017-10-07_N2_OP50_ASH_Glycerol_3_background_results.csv
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_3/2017-10-07_N2_OP50_ASH_Glycerol_3_neuron_results.csv
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_4/.DS_Store
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_4/2017-10-07_N2_OP50_ASH_Glycerol_4_ImageJ_data.csv
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_4/2017-10-07_N2_OP50_ASH_Glycerol_4_background_results.csv
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_4/2017-10-07_N2_OP50_ASH_Glycerol_4_neuron_results.csv
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_5/.DS_Store
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_5/2017-10-07_N2_OP50_ASH_Glycerol_5_ImageJ_data.csv
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_5/2017-10-07_N2_OP50_ASH_Glycerol_5_background_results.csv
extdata/Ca_imaging/imageJ_format/2017-10-07_N2_OP50_ASH_Glycerol_5/2017-10-07_N2_OP50_ASH_Glycerol_5_neuron_results.csv
extdata/Ca_imaging/imageJ_format/N2_glycerol_GCAMP_OP50_plots.png
extdata/Ca_imaging/imageJ_format/N2_glycerol_GCAMP_OP50_rawdata.csv
extdata/Ca_imaging/mat_format/.DS_Store
extdata/Ca_imaging/mat_format/N2_glycerol_GCAMP_OP50_plots.png
extdata/Ca_imaging/mat_format/N2_glycerol_GCAMP_OP50_rawdata.csv
extdata/Ca_imaging/mat_format/N2_hexanol_GCAMP_OP50_plots.png
extdata/Ca_imaging/mat_format/OP50_ASH_Glycerol_1_reg.mat
extdata/Ca_imaging/mat_format/OP50_ASH_Glycerol_2_reg.mat
extdata/Ca_imaging/mat_format/OP50_ASH_Glycerol_3_reg.mat
extdata/Ca_imaging/mat_format/OP50_ASH_Glycerol_4_reg.mat
extdata/Ca_imaging/mat_format/OP50_ASH_Glycerol_5_reg.mat
inst/register_quantGCaMP.ijm
install_registration.sh
man/GetSripeProp.Rd
man/Import.WL.data.Rd
man/Prism_scatter.Rd
man/Speed_curve_4xParallel.Rd
man/WLmult_dauer_res.Rd
man/WriteStripeProp.Rd
man/beh_mat.Rd
man/beh_mat_tidy.Rd
man/beh_merge_all.Rd
man/beh_merge_all_tidy.Rd
man/curve.angle.Rd
man/dir_mat.Rd
man/dir_mat_tidy.Rd
man/exp.fit.all.log.lin.Rd
man/figures/README-unnamed-chunk-5-1.png
man/figures/README-unnamed-chunk-6-1.png
man/figures/README-unnamed-chunk-7-1.png
man/figures/README-unnamed-chunk-7-10.png
man/figures/README-unnamed-chunk-7-11.png
man/figures/README-unnamed-chunk-7-2.png
man/figures/README-unnamed-chunk-7-3.png
man/figures/README-unnamed-chunk-7-4.png
man/figures/README-unnamed-chunk-7-5.png
man/figures/README-unnamed-chunk-7-6.png
man/figures/README-unnamed-chunk-7-7.png
man/figures/README-unnamed-chunk-7-8.png
man/figures/README-unnamed-chunk-7-9.png
man/fix_reversals.Rd
man/getAmpVdelF.Rd
man/lingrad_mirror.Rd
man/max_delta.Rd
man/max_negdelta.Rd
man/melt_matData.Rd
man/merge_FIJI_data.Rd
man/norm_beh_enter.Rd
man/norm_beh_enter_3.Rd
man/norm_beh_exit.Rd
man/norm_beh_exit_3.Rd
man/plotAvgResidency.Rd
man/plotGCaMP_multi.Rd
man/plotResidency_stripes.Rd
man/plot_Residency.Rd
man/plot_Residency_overlay.Rd
man/plot_heatmap.Rd
man/plot_speedFood.Rd
man/plot_stateProbs.Rd
man/pulse_amplitude.Rd
man/read.binsize.Rd
man/register_movie.Rd
man/spd_mat_tidy.Rd
man/x_mat_tidy.Rd
man/y_mat.Rd
man/y_mat_tidy.Rd
quantGCaMP.ijm
registerGCaMP_auto.ijm
registerGCaMP_auto_batch.ijm
register_auto.sh
register_macro.ijm
register_quantGCaMP.ijm
register_quantGCaMP_sum.ijm
scripts/Beh_gradients_complex.R
scripts/Beh_gradients_simple.R
scripts/Beh_state_fits_1stripe.R
scripts/Beh_states_gradients.R
scripts/Behprob_1stripe.R
scripts/Behprob_3stripes.R
scripts/Mapnoisedeviance.R
scripts/Oct_3stripe_data.R
scripts/Plot_wormlab_dauer.R
scripts/Speed_Curvature_manual.R
scripts/Speed_curve_4xParallel.R
scripts/behavioral_state_fits.R
scripts/behavioral_state_fits_messy.R
scripts/histogram_browser.R
scripts/linear_gradients.R
scripts/linear_gradients_AH.R
scripts/plot_matlab_pulses.R
scripts/plot_tracks.R
