Man pages for mikeroswell/MeanRarity
Hill Diversity Estimation and Visualization

beeAbundsBee specimens from 4 sites sampled with equal effort,...
beeObsBee specimens from 4 sites sampled with equal effort
Bt_prob_abuGenerate "augmented" sample for bootstrapping
Chao_Hill_abuEstimate asymptotic Hill diversity
Chat.IndEstimate sample coverage
combfunSums duplicate values, for determining [species] weights
divproGenerate Hill diversity profile
e2dHill diversity from evenness
e3FunNormalized Hill evenness
effort_rareRarefied diversity estimates for each site, multiple...
ellnotateConvenience function to label rarity plots with scaling...
ENSerWorker to iteratively solve ENS transformation of Hurlbert...
err_plot_dataSampling variability in Hill diversity
errsEstimator accuracy and bias
ExpExponentiate 'x' to power 'y'
fit_SADFit a SAD given diversity and a distributional assumption
grapes-ni-grapesNot in
GUEGod's unbiased estimator
hRareHurlbert rarefaction
hurlEstimate ENS based on Hurlbert rarefaction
ipfunInverse function for power transformation
LnRobust natural log
mean_estsRarefied diversity estimates for each site
MeanRarity-packageMeanRarity: A package for computing Hill diversity under the...
obs_estObserved and asymptotic diversity
omit_yConvenience function to omit y-axis elements for constructing...
pfunPower transformation
pipePipe operator
power_transPower scale transformation
print_operatorRatio labels
radplotPlot a rank-abundance distribution
rarityCompute Hill diversity: the mean species rarity
rarity_plotConstruct rarity balance plot
rat_breaksCompute breaks for ratio scale
rmsleRoot mean squared log error
sample_finiteTake an abundance vector and subsample to size
sample_infiniteSample a [relative] abundance vector with replacement
seesaw_sugarggplot sugar for rarity plots
subcomSubsample of several community vectors A wrapper of...
try_SADRelative abundances, given richness and distributional...
white_yConvenience function to blank y-axis elements for...
mikeroswell/MeanRarity documentation built on May 5, 2024, 4:50 p.m.