NMRMetab_anova: Normalisation and Scaling

In mikies21/beetlesNMR: NMR analysis

Description

Normalisation and Scaling

Usage

NMRMetab_anova(
  data,
  index_col = 3,
  group_test = "group",
  sigLevel = 0.05,
  adjMethod = "fdr"
)

Arguments

data	a data.frame. Column as variable and rows as sample
index_col	integer value. The column number with first bin/matabolite
group_test	charachter string. name of the group column to test
sigLevel	double. set to 0.05, significance level to detect differences between groups,
adjMethod	charachter string. multiple comparison adjustment method. Available methods: "holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none". "BH" stands for Benjamini-Hochberg; "BY" for Benjamini-Yakutieli; "fdr" is false discovery rate (same as "BH")

Author(s)

Eva Caamano Gutierrez

Arturas Grauslys

mikies21/beetlesNMR documentation built on Sept. 30, 2021, 11:13 a.m.