PlotSplitGroupDEGs: PlotSplitGroupDEGs

In milescsmith/DEGcompareR: Find, plot, and write differentially expressed genes within groups of a Seurat object

Description

For a given Seurat object and a list of intragroup DEGs, for each grouping plot the genes that were differentially expressed between each comparison_group. The results for each comparison within the group will be plotted in its own bubbleplot, and all comparisons for that group are combined into one compound plot.

Usage

PlotSplitGroupDEGs(object, combo_list, group_by = "celltype",
  compare_by = "class", ...)

Arguments

object	Processed Seurat scRNAseq object
combo_list	List of list of differentially expressed genes from DEcombinations
group_by	Primary grouping variable (from ident slot or meta.data column)
compare_by	Intragroup comparison variable
...	Additional parameters to pass to bubbleplot

Value

A list of gtables

milescsmith/DEGcompareR documentation built on May 26, 2019, 9:33 a.m.