plotRegulatorZscores: plotRegulatorZscores

In milescsmith/IPAPlots: Plot pathway data exported from IPA

Description

plotRegulatorZscores

Usage

plotRegulatorZscores(...)

## S3 method for class 'data.frame'
plotRegulatorZscores(module_table,
  number_genes_show = 10, pos_label_force = 10, neg_label_force = 10,
  plot_these_regulators = NULL, title = NULL, ...)

## S3 method for class 'list'
plotRegulatorZscores(module_table, ...)

Arguments

...	Additional parameters to pass
module_table	A data.frame or tibble with the columns "Upstream Regulator", "Activation z-score", and "p-value of overlap". Use prepUpstreamRegulatorLists
number_genes_show	The number of genes with the top negative and positive z-scores to label
pos_label_force	The replusion force for the positive z-scoring gene names, passed to geom_text_repel
neg_label_force	The replusion force for the negative z-scoring gene names, passed to geom_text_repel
plot_these_regulators	A list of potential regulators to use as a filter. Only those regulators that are in this list will be displayed (if present).
title	Plot title

Value

a ggplot object

milescsmith/IPAPlots documentation built on May 28, 2019, 1:21 p.m.