Description Usage Arguments Value
Produces a Bubble Plot for the genes of a given GO term.
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object |
Seurat object |
go_term |
Gene Ontology term identifier (i.e. GO:0046774) |
group_by |
Factor by which to group cells. (default: ident) |
filter |
A list of gene names to filter the GO term members against. (default: all genes in object) |
filter_exp_pct |
Display only genes that are expressed above this fraction of cells in at least one group. (default: NULL) |
filter_exp_pct_thresh |
Threshold for expression fraction. (default: 0) |
filter_exp_level |
Display only genes that are expressed above this level in at least one group. (default: 0) |
x_lab_size |
x-axis label font size. Default: 9 |
y_lab_size |
y-axis label font size. Default: 9 |
x_lab_rot_angle |
x-axis label rotation. Default: 45 |
cluster_x |
Should x-axis variables be clustered? Default: TRUE |
cluster_y |
Should x-axis variables be clustered? Default: TRUE |
colors_use |
Colors to use for coloring gene expression |
do_return |
If TRUE, return a ggplot2 object instead of displaying chart |
... |
Additional options to pass to bubbleplot |
if isTRUE(do_return), a ggplot2 object
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