addTaxonBySiteData: Add a taxon by site table
In miquelcaceres/VegX: Vegetation data in Veg-X

addTaxonBySiteData

R Documentation

Add a taxon by site table

Description

Adds the aggregate organism observations of a taxon by site table to an existing VegX object.

Usage

addTaxonBySiteData(
  target,
  x,
  abundanceMethod,
  obsDates = Sys.Date(),
  isTaxon = TRUE,
  absence.values = c(NA, 0),
  verbose = TRUE
)

Arguments

`target`	The object of class `VegX` to be modified.
`x`	A taxon by site (plot) table (with plots in rows and taxa in columns) and with plant abundance values.
`abundanceMethod`	A measurement method for aggregate plant abundance (an object of class `VegXMethodDefinition`).
`obsDates`	A `Date` or a vector of `Date` objects with plot observation dates.
`isTaxon`	A boolean flag (or vector) to indicate which organism names are taxa.
`absence.values`	A vector of values to be interpreted as missing plant information.
`verbose`	A flag to indicate console output of the data integration process.

Value

A modified object of class VegX

Other add functions: addAggregateOrganismObservations(), addCommunityObservations(), addIndividualOrganismObservations(), addPlotGeometries(), addPlotLocations(), addPlotObservations(), addSiteCharacteristics(), addSiteObservations(), addStratumObservations(), addSurfaceCoverObservations()