tests/testthat/test-utils_read.R

In miraisolutions/covid19-vaccination-ch: Vaccination Breakthroughs in CH

# INVALID SINCE READING IS NOT POSSIBLE
# test_that("reading vaccination data works", {
#   bag_sources = fromJSON(bag_api_url)
#   sourceDate <- bag_sources$sourceDate
#
#   Hosp_vaccpersons <- bag_sources$sources$individual$json$weekly$byAge$hospVaccPersons
#   expect_false(is.null(Hosp_vaccpersons), label = "sources$individual$json$weekly$byAge$hospVaccPersons is NULL")
#
#   HOSP.VAC.J <- fromJSON(Hosp_vaccpersons) %>%
#     filter(!grepl("2020",date)) %>%
#     mutate(Week = .makeweek(date))
#
#   expect_equal(sort(unique(HOSP.VAC.J$vaccination_status)[unique(HOSP.VAC.J$vaccination_status) != "fully_vaccinated"]),
#                as.character(sort(vac_levels())),
#                label = "Vaccination Levels do notcorrespond to expected in HOSP.VAC.J")
#   # expect_equal(sort(unique(HOSP.VAC.J$altersklasse_covid19)[!unique(HOSP.VAC.J$altersklasse_covid19) %in% c("Unbekannt", "all")]),
#   #              as.character(sort(ageclassMap$ageclass)),
#   #              label = "altersklasse_covid19 do not correspond to expected of ageclassMap in HOSP.VAC.J")
#   #
#   expect_true(all(as.character(sort(ageclassMap$ageclass)) %in% unique(HOSP.VAC.J$altersklasse_covid19)),
#               label = "altersklasse_covid19 do not correspond to expected of ageclassMap in HOSP.VAC.J")
#
#   Death_vaccpersons <- bag_sources$sources$individual$json$weekly$byAge$deathVaccPersons
#   expect_false(is.null(Death_vaccpersons), label = "sources$individual$json$weekly$byAge$deathVaccPersons is NULL")
#
#   DEATH.VAC.J <- fromJSON(Death_vaccpersons) %>%
#     filter(!grepl("2020",date)) %>%
#     mutate(Week = .makeweek(date))
#
#   expect_equal(sort(unique(DEATH.VAC.J$vaccination_status)[unique(DEATH.VAC.J$vaccination_status) != "fully_vaccinated"]),
#                as.character(sort(vac_levels())),
#                label = "Vaccination Levels do notcorrespond to expected in HOSP.VAC.J")
#   # expect_equal(sort(unique(DEATH.VAC.J$altersklasse_covid19)[!unique(DEATH.VAC.J$altersklasse_covid19) %in% c("Unbekannt", "all")]),
#   #              as.character(sort(ageclassMap$ageclass)),
#   #              label = "altersklasse_covid19 do not correspond to expected of ageclassMap in HOSP.VAC.J")
#
#   expect_true(all(as.character(sort(ageclassMap$ageclass)) %in% unique(DEATH.VAC.J$altersklasse_covid19)),
#               label = "altersklasse_covid19 do not correspond to expected of ageclassMap in DEATH.VAC.J")
#
#
#   DATA = read_bag_data_vac(bag_api_url, ageclassMap)
#
#   expect_true(nrow(DATA)>0,
#               label = "read_bag_data_vac dows not return rows")
#   expect_equal(levels(DATA$vaccination_status), names(vac_levels()),
#                label = "Vaccination Levels do not correspond to expected")
#   expect_equal(names(DATA),
#                c("AsOfDate","Week","geoRegion","ageclass","AgeClass","AgeClass2","vaccination_status","pop","hosp","hosp_tot",
# "deaths","deaths_tot"),
#                label = "Expected columns are not returned")
#   expect_true(sum(is.na(DATA[, c("hosp", "deaths", "hosp_tot", "deaths_tot")])) == 0,
#                label = "NAs present in 'hosp' or 'deaths' variables")
#
# })
# test_that("reading case data works", {
#   bag_sources = fromJSON(bag_api_url)
#   CASES = read_bag_data_cases(bag_api_url, ageclassMap)
#
#   expect_true(nrow(CASES)>0,
#               label = "read_bag_data_cases dows not return rows")
#
#   expect_equal(names(CASES),
#                c("Week","AsOfDate","geoRegion","ageclass","AgeClass","AgeClass2","confirmed","confirmed_tot","pop"),
#                label = "Expected columns are not returned")
#   expect_true(sum(is.na(CASES[, c("confirmed" , "confirmed_tot")])) == 0,
#               label = "NAs present in 'confirmed' variables")
#
#   expect_equal(sort(unique(CASES$ageclass )[!unique(CASES$ageclass ) %in% c("Unbekannt", "All")]),
#                as.character(sort(ageclassMap$ageclass)),
#                label = "altersklasse_covid19 do not correspond to expected of ageclassMap in read_bag_data_cases")
#   expect_true(all(as.character(sort(ageclassMap$ageclass)) %in% unique(CASES$ageclass)),
#               label = "altersklasse_covid19 do not correspond to expected of ageclassMap in CASES")
#
#
# })