README.md

In mirnavazquez/MetabolismTools: A package used for the analysis of microbial metabolism

MetabolismTools

This package, for now, contains two functions: Bubble_plot and ko_pheatmap_for_CP9_groups.

The first function creates a bubble plot and allows you to color by your data's particular feature. The second function is currently under development, but it makes a heatmap of specific KO ids.

Install the package like this:

install.packages("devtools")

library(devtools)

install_github("mirnavazquez/MetabolismTools")

Run the example:

library(MetabolismTools)

Bubble_plot(example, "gene", "genomes", "abundance", "group")

Explore the data format by looking at the "example" data.

mirnavazquez/MetabolismTools documentation built on April 8, 2021, 9:21 p.m.