slapGT: Run step II via globaltest package
In mitra-ep/slapmeg: Pathway Testing for Longitudinal Omics
slapGT R Documentation
Run step II via globaltest package
Description
Globaltest is used to test the association between phenotype variable and
estimated random effects from step I.
Usage
slapGT(EBS, data_inf, rand_nam, Ynames, grouping, Emethod)
Arguments
EBS
Estimated random effects by either joint or pairwise approach
data_inf
Dataframe with variables required for the test
rand_nam
Names of random effects defined in model
Ynames
Name of omics in pathway
grouping
Name of the covariate representing the grouping by the phenotype
Emethod
Estimation method for the random effects which is either joint or pairwise
Value
A GT object containing globaltest results
Author(s)
Mitra Ebrahimpoor
mitra-ep/slapmeg documentation built on Oct. 27, 2024, 1:20 a.m.
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| slapGT | R Documentation |
Run step II via globaltest package
Description
Globaltest is used to test the association between phenotype variable and estimated random effects from step I.
Usage
slapGT(EBS, data_inf, rand_nam, Ynames, grouping, Emethod)
Arguments
EBS |
Estimated random effects by either joint or pairwise approach |
data_inf |
Dataframe with variables required for the test |
rand_nam |
Names of random effects defined in model |
Ynames |
Name of omics in pathway |
grouping |
Name of the covariate representing the grouping by the phenotype |
Emethod |
Estimation method for the random effects which is either joint or pairwise |
Value
A GT object containing globaltest results
Author(s)
Mitra Ebrahimpoor
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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