signedKME2: Calculation of (signed) eigengene-based connectivity, without...
In mjdufort/WGCNAtools: Simplify use of WGCNA
signedKME2 R Documentation
Calculation of (signed) eigengene-based connectivity, without perturbing gene names.
Description
This is a wrapper for signedKME, with the additional step of reverting the gene names in the
result to the input gene names. signedKME converts all special characters in the gene names to
".", and this causes name mismatches downstream.
Usage
signedKME2(datExpr, datME, ...)
Arguments
datExpr
a data frame containing the gene expression data, passed to signedKME
datME
a data frame containing module eigengenes, passed to signedKME
...
additional optional arguments to be passed to signedKME
Value
A data frame, as returned by signedKME, with any "_" in the gene names of datExpr retained as "_" in the result.
mjdufort/WGCNAtools documentation built on Oct. 10, 2024, 12:25 p.m.
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| signedKME2 | R Documentation |
Calculation of (signed) eigengene-based connectivity, without perturbing gene names.
Description
This is a wrapper for signedKME, with the additional step of reverting the gene names in the result to the input gene names. signedKME converts all special characters in the gene names to ".", and this causes name mismatches downstream.
Usage
signedKME2(datExpr, datME, ...)
Arguments
datExpr |
a data frame containing the gene expression data, passed to signedKME |
datME |
a data frame containing module eigengenes, passed to signedKME |
... |
additional optional arguments to be passed to signedKME |
Value
A data frame, as returned by signedKME, with any "_" in the gene names of datExpr retained as "_" in the result.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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