get_internal_region_lengths: Returns the overall length of each region with UTR Junctions

In mjgeng/ribor: An R Interface for Ribo Files

Description

The function get_internal_region_coordinates retrieves the lengths for the UTR5, UTR5 Junction, CDS, UTR3 Junction, and UTR3 regions of every transcript.

Usage

get_internal_region_lengths(ribo.object, alias = FALSE)

Arguments

ribo.object	A 'Ribo' object
alias	Option to return the transcript names as aliases

Value

A data.frame of the region lengths

Examples

# generate a ribo object 
file.path <- system.file("extdata", "HEK293_ingolia.ribo", package = "ribor")
sample <- Ribo(file.path, rename = rename_default)

# get the region lengths
region_lengths <- get_internal_region_lengths(sample, alias = TRUE)

mjgeng/ribor documentation built on Dec. 21, 2021, 7:03 p.m.