findLabeledPeaks: findLabeledPeaks

In mjhelf/METABOseek: Metaboseek platform

findLabeledPeaks

Description

find labeled peaks in a data.frame that was prepared by mergecollectlist()

Usage

findLabeledPeaks(
  df,
  ref_intensityCols,
  comp_intensityCols,
  ifoldS1 = 10,
  ifoldS2 = 5
)

Arguments

df	data.frame as returned by mergecollectlist(); importantly with IXSX prefixes, including for the intensity columns
ref_intensityCols	intensity column names from original feature table (without IXS1. prefix) e.g. for unlabeled samples
comp_intensityCols	intensity column names from original feature table (without IXS2. prefix) e.g. for labeled samples
ifoldS1	min. fold Iso1/Iso2 in unlabeled
ifoldS2	max. fold Iso1/Iso2 in labeled

mjhelf/METABOseek documentation built on April 27, 2022, 5:13 p.m.