run_scrabble: Run original SCRABBLE

In mkarikom/DURIAN: Deconvolution and Multitask Regression-Based Imputation

Run original SCRABBLE

Description

Run original SCRABBLE

Usage

run_scrabble(
  path,
  scrabble_parameters = c(1, 1e-06, 1e-04),
  nIter_outer = 20,
  nIter_inner = 20,
  nSDCIters = 10000,
  C_fn = "ldaC.csv.gz",
  T_fn = "B.csv.gz",
  scdata = NULL,
  bulkdata = NULL,
  scrcellids = NULL,
  scrgeneids = NULL,
  imputebenchmark = NULL,
  allScr = TRUE,
  error_out_threshold = 1e-07,
  error_inner_threshold = 1e-05,
  outerStats = FALSE,
  metadata = NULL,
  useIrlba = TRUE,
  runstability = FALSE
)

Arguments

path	The path to the input data if not provided as an object.
scrabble_parameters	The ADMM parameters

Value

The imputed data.

mkarikom/DURIAN documentation built on May 21, 2022, 1:18 p.m.