searchAtlasExperiments: Search for Expression Atlas experiments
In mkeays/ExpressionAtlas: Download datasets from EMBL-EBI Expression Atlas

Description Usage Arguments Value Examples

This function accepts a vector of sample properties, and optionally a species name, and then searches for matching Expression Atlas experiments.

1	searchAtlasExperiments( properties, species = NULL )

`properties`	Character vector of sample properties to search Atlas for. These can be biological characteristics, experimental treatments, etc.
`species`	Optional. The name of a species to limit results to. If not provided, search is performed across all species in Expression Atlas.

A DataFrame containing the ArrayExpress accessions, the species, experiment types, and titles of Expression Atlas experiments matching the query.

    
    # Search for experiments on salt in rice.
    atlasRes <- searchAtlasExperiments( "salt", "Oryza sativa" )

    # Download data for all experiments found.
    atlasData <- getAtlasData( atlasRes$Accession )