Removal_Batch: Title Removal_Batch
In mmeaseR/mmeaseR: Meta-analysis of Metabolomics data by Enhanced metabolite Annotation and marker Selection and Enrichment analysis
View source: R/Step1_data_integrate.R
Removal_Batch R Documentation
Title Removal_Batch
Description
Title Removal_Batch
Usage
Removal_Batch(mutile_align, n = 3, algorithm = "BMC/PAMR")
Arguments
mutile_align
The comprehensive dataset integrated from multiple groups.
n
The number of multiple groups.
algorithm
The algorithm for removing batch effects in multiple groups. The algorithm could be BMC/PAMR, ComBat/EB, DWD, GlobalNorm, XPN or None.
loga
TRUE indicates log transformation will be used, FALSE indicates log transformation will not be used.
Value
A matrix of a dataset after removing batch effects for the integrated dataset.
Examples
Removal_Batch(mutile_align, n = 3, algorithm = "BMC/PAMR", loga= TRUE)
mmeaseR/mmeaseR documentation built on March 29, 2022, 10:13 p.m.
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View source: R/Step1_data_integrate.R
| Removal_Batch | R Documentation |
Title Removal_Batch
Description
Title Removal_Batch
Usage
Removal_Batch(mutile_align, n = 3, algorithm = "BMC/PAMR")
Arguments
mutile_align |
The comprehensive dataset integrated from multiple groups. |
n |
The number of multiple groups. |
algorithm |
The algorithm for removing batch effects in multiple groups. The algorithm could be BMC/PAMR, ComBat/EB, DWD, GlobalNorm, XPN or None. |
loga |
TRUE indicates log transformation will be used, FALSE indicates log transformation will not be used. |
Value
A matrix of a dataset after removing batch effects for the integrated dataset.
Examples
Removal_Batch(mutile_align, n = 3, algorithm = "BMC/PAMR", loga= TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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