dist_prob_to_class: Returns the class with the highest probability in a genotype...

View source: R/utils.R

dist_prob_to_classR Documentation

Returns the class with the highest probability in a genotype probability distribution

Description

Returns the class with the highest probability in a genotype probability distribution

Usage

dist_prob_to_class(geno, prob.thres = 0.9)

Arguments

geno

the probabilistic genotypes contained in the object 'mappoly.data'

prob.thres

probability threshold to select the genotype. Values below this genotype are assumed as missing data

Value

a matrix containing the doses of each genotype and marker. Markers are disposed in rows and individuals are disposed in columns. Missing data are represented by NAs

Examples


geno.dose <- dist_prob_to_class(hexafake.geno.dist$geno)
geno.dose$geno.dose[1:10,1:10]
   

mmollina/MAPpoly documentation built on March 9, 2024, 2:52 a.m.