Man pages for mnodzenski/epistasisGA
An R package to identify multi-snp effects in nuclear family studies using the GADGETS method
| case | Genotypes for the affected children of case-parent triads. |
| case.gxe | Genotypes for the cases of case-parent triads with a... |
| case.mci | Genotypes for the affected cases of case-parent triads with a... |
| chrom.fitness.score | A function to assign a fitness score to a chromosome |
| combine.islands | A function to combine GADGETS results for individual islands... |
| compute.graphical.scores | A function to compute SNP-pair scores for network plots of... |
| dad | Genotypes for the fathers of case-parent triads. |
| dad.gxe | Genotypes for the fathers of case-parent triads with a... |
| dad.mci | Genotypes for the fathers of case-parent triads with a... |
| epistasisGA | 'epistasisGA' package |
| epistasis.test | A function to run a test of the null hypothesis that a... |
| exposure | Exposures for the cases of case-parent triads with a... |
| GADGETS | A function to run the GADGETS method |
| global.test | A function to run a global test of the null hypothesis that... |
| GxE.fitness.score | A function to assign an E-GADGETS (GxGxE) fitness score to a... |
| GxE.test | A function to run a test of interaction between a collection... |
| mom | Genotypes for the mothers of case-parent triads. |
| mom.gxe | Genotypes for the mothers of case-parent triads with a... |
| mom.mci | Genotypes for the mothers of case-parent triads with a... |
| network.plot | A function to plot a network of SNPs with potential multi-SNP... |
| permute.dataset | A function to create permuted datasets for permutation based... |
| preprocess.genetic.data | A function to pre-process case-parent triad or... |
| run.gadgets | A function to run the GADGETS algorithm to detect multi-SNP... |
| snp.annotations | RSID, REF, and ALT annotations for example dataset SNPs |
| snp.annotations.mci | RSID, REF, and ALT annotations for example dataset SNPs |
