CreateAssay5Object: Create a v5 Assay object

In mojaveazure/seurat-object: Data Structures for Single Cell Data

Create a v5 Assay object

Description

Create an Assay5 object from a feature expression matrix; the expected format of the matrix is features x cells

Usage

CreateAssay5Object(
  counts = NULL,
  data = NULL,
  min.cells = 0,
  min.features = 0,
  csum = NULL,
  fsum = NULL,
  ...
)

Arguments

counts	A two-dimensional expression matrix
data	Optional prenormalized data matrix
min.cells	Include features detected in at least this many cells; will subset the counts matrix as well. To reintroduce excluded features, create a new object with a lower cutoff
min.features	Include cells where at least this many features are detected
csum	Function for calculating cell sums
fsum	Function for calculating feature sums
...	Arguments passed to other methods

Value

An Assay5 object

mojaveazure/seurat-object documentation built on Nov. 22, 2024, 11:36 p.m.