MosaicCalculator: Calculate mosaic percentage

In molgenis/molgenis-r-mosaic: Mosaic Calculator

Description

Takes a experiment number, gender, snp dataframe and events dataframe and calculates the percentage of mosaic dna

Usage

MosaicCalculator(exp.nr, gender, snpm.data, deviations, outfile)

Arguments

exp.nr	numerical experiment number
gender	string denoting gender ( "Male", "Female" or "Unknown")
snpm.data	dataframe containing snp data ( "Chr", "Position", "B Allele Freq")
deviations	dataframe containing deviations ( "Chromosome Region", "Event", "Length", "Cytoband", precentage of CNV Overlap", "Probe Median", "precentage Heterozygous", "Probes", "Count of Gene Symbols")
outfile	optional path to direct pdf output to, if not set './Rplots.pdf' is used

molgenis/molgenis-r-mosaic documentation built on May 15, 2020, 8:30 a.m.