vignette/COVID19/scripts/README.md
In momeara/BioChemPantry: Load bioinformatics datasets into a local database
These scripts were used to make chemoinformatic predictions for the set
of proteomic targets identified to interact with SARS-CoV-2 proteins
in (Gordon, et al., 2020).
It builds on the BioChemPantry R package (github.com/momeara/BioChempantry)
which prepares biology and chemistry datasets into a Postgres database
to facilitate merging using the R tidyverse framework.
Running the code
Using the BioChemPantry run the vignettes to setup the following datasets
* hgnc_171217
* sea_chembl25
* guide_to_pharmacology_2020_03
From the directory containing raw_data/, intermediate_data/, scripts/, and product/
run the scripts in scripts/ sequentially.
momeara/BioChemPantry documentation built on Aug. 13, 2021, 9:46 p.m.
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These scripts were used to make chemoinformatic predictions for the set of proteomic targets identified to interact with SARS-CoV-2 proteins in (Gordon, et al., 2020).
It builds on the BioChemPantry R package (github.com/momeara/BioChempantry) which prepares biology and chemistry datasets into a Postgres database to facilitate merging using the R tidyverse framework.
Running the code
Using the BioChemPantry run the vignettes to setup the following datasets * hgnc_171217 * sea_chembl25 * guide_to_pharmacology_2020_03
From the directory containing raw_data/, intermediate_data/, scripts/, and product/ run the scripts in scripts/ sequentially.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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