oceanMaps: Function #1.4 oceanMaps function in progress to plot...
In monteroserra/rOceans: Spatial Trends in Marine Biodiversity and Conservation

oceanMaps

R Documentation

Function #1.4 oceanMaps function in progress to plot different outputs of the rOcean package visualize spatial patterns in marine biodiversity

Description

to map different metrics computed using functions of the rOcean package

Usage

oceanMaps(grid, grid_provided = T, logScale = F, occurrences,
  map_occurrences = F, convex_hull = F, long_name = "decimalLongitude",
  lat_name = "decimalLatitude", min_long = -180, max_long = 180,
  min_lat = -90, max_lat = 90, species_name = "species",
  background_color = "grey10", dot_color = "steelblue",
  low_color = "steelblue", mid_color = "gold", high_color = "firebrick",
  col_steps = 20, main = "")

Arguments

`grid`	raster of species presences, richness, abundance or other metrics.
`grid_provided`	to indicate whether a raster is provided to be mapped
`occurrences`	species occurrences dataframe with at least latitude and longitude columns
`map_occurrences`	if true, occurrences are mapped for each species
`convex_hull`	if true, a convex hull is computed and mapped for each species of occurrences
`long_name`	column name for longitudes in the "occurrences" dataframe
`lat_name`	column name for latitudes in the "occurrences" dataframe
`min_long`	minimum longitude of the analysis
`max_long`	maximum longitude of the analysis
`max_lat`	maximum latitude of the analysis
`log_scale`	if True grid values are plotted in a log scale, useful for abundance representations
`species_names`	column name for species names in the "occurrences" dataframe
`max_long`	minimum latitute of the analysis