enrich_communities_interactive_meta: Meta interactive enrichment for all communities of the...
In montilab/hypeR-next: Network Enrichment
enrich_communities_interactive_meta R Documentation
Meta interactive enrichment for all communities of the network
Description
Meta interactive enrichment for all communities of the network
Usage
enrich_communities_interactive_meta(
ig,
genesets,
restart = 0.5,
fdr = 1,
pval = 1,
top = 1,
mse = -inf,
val = NULL
)
Arguments
ig
An igraph object
genesets
A named list of genesets
restart
Restart probability between 0-1
fdr
Passed to hypeR
pval
Passed to hypeR
top
Limit number of genesets shown
mse
Minimum shared edges threshold to visualize
val
A value to associate with genesets
Value
An visnetwork object
montilab/hypeR-next documentation built on March 11, 2023, 11:50 a.m.
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| enrich_communities_interactive_meta | R Documentation |
Meta interactive enrichment for all communities of the network
Description
Meta interactive enrichment for all communities of the network
Usage
enrich_communities_interactive_meta( ig, genesets, restart = 0.5, fdr = 1, pval = 1, top = 1, mse = -inf, val = NULL )
Arguments
ig |
An igraph object |
genesets |
A named list of genesets |
restart |
Restart probability between 0-1 |
fdr |
Passed to hypeR |
pval |
Passed to hypeR |
top |
Limit number of genesets shown |
mse |
Minimum shared edges threshold to visualize |
val |
A value to associate with genesets |
Value
An visnetwork object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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