README.md

In montilab/vennr: venn.r

venn.r

Area proportional venn and euler diagrams through venn.js

Installation

Install the development version of the package from Github.

devtools::install_github("montilab/vennr")

library(vennr)

Examples

sets <- list("Set A" = LETTERS[1:10],
             "Set B" = LETTERS[7:15],
             "Set C" = LETTERS[20:24])

vennr(sets)

sets <- list(list(sets=list('Tigers'), size=12),
             list(sets=list('Lions'),  size=6),
             list(sets=list('Bears'),  size=20),
             list(sets=list('Tigers', 'Lions'), size=3, label="Ligers"))

vennr(sets, raw=TRUE)

str(head(genesets))

List of 6
 $ Adipogenesis       : chr [1:200] "ABCA1" "ABCB8" "ACAA2" "ACADL" ...
 $ Allograft rejection: chr [1:200] "AARS" "ABCE1" "ABI1" "ACHE" ...
 $ Androgen response  : chr [1:100] "ABCC4" "ABHD2" "ACSL3" "ACTN1" ...
 $ Angiogenesis       : chr [1:36] "APOH" "APP" "CCND2" "COL3A1" ...
 $ Apical junction    : chr [1:200] "ACTA1" "ACTB" "ACTC1" "ACTG1" ...
 $ Apical surface     : chr [1:44] "ADAM10" "ADIPOR2" "AFAP1L2" "AKAP7" ...

vennr(genesets[30:35])

vennr(genesets[25:35], labels=FALSE)

montilab/vennr documentation built on Dec. 27, 2019, 2:18 a.m.