tmtMS2orig: tmtMS2orig

Description Usage Format Details Source References Examples

Description

This is the full dataset for TMT-MS2 (A Tannous et al., 2020), including genes, peptides, and spectra

Usage

1
data("tmtMS2orig")

Format

A data frame with 131699 observations on the following 15 variables.

gene

a character vector

peptide

a character vector

modifications

a character vector

Filename..scan

a character vector

N

a numeric vector

M

a numeric vector

L1

a numeric vector

L2

a numeric vector

P

a numeric vector

S

a numeric vector

Nyc.1

a numeric vector

Nyc.2

a numeric vector

Nyc.3

a numeric vector

geneId

a numeric vector

geneSeqId

a numeric vector

Details

geneID is a unique numeric identifier for gene, and geneSeqId is a unique numeric identifier for peptide

Source

Tannous A, Boonen M, Zheng H, Zhao C, Germain C, Moore D, Sleat D, Jadot M, Lobel P. Comparative Analysis of Quantitative Mass Spectrometric Methods for Subcellular Proteomics. Journal of Proteome Research 2020, in press

References

Jadot M, Boonen M, Thirion J, Wang N, Xing J, Zhao C, Tannous A, Qian M, Zheng H, Everett JK, Moore DF, Sleat DE, Lobel P (2016) Accounting for protein subcellular localization: a compartmental map of the rat liver proteome. Molecular and Cellular Proteomics 16, 194-212. doi:10.1074/mcp.M116.064527 PMCID: PMC5294208

Examples

1

mooredf22/protsummarize2 documentation built on Nov. 21, 2020, 7:41 p.m.