Description Usage Format Details Source References Examples
This is the full dataset for TMT-MS2 (A Tannous et al., 2020), including genes, peptides, and spectra
1 | data("tmtMS2orig")
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A data frame with 131699 observations on the following 15 variables.
gene
a character vector
peptide
a character vector
modifications
a character vector
Filename..scan
a character vector
N
a numeric vector
M
a numeric vector
L1
a numeric vector
L2
a numeric vector
P
a numeric vector
S
a numeric vector
Nyc.1
a numeric vector
Nyc.2
a numeric vector
Nyc.3
a numeric vector
geneId
a numeric vector
geneSeqId
a numeric vector
geneID is a unique numeric identifier for gene, and geneSeqId is a unique numeric identifier for peptide
Tannous A, Boonen M, Zheng H, Zhao C, Germain C, Moore D, Sleat D, Jadot M, Lobel P. Comparative Analysis of Quantitative Mass Spectrometric Methods for Subcellular Proteomics. Journal of Proteome Research 2020, in press
Jadot M, Boonen M, Thirion J, Wang N, Xing J, Zhao C, Tannous A, Qian M, Zheng H, Everett JK, Moore DF, Sleat DE, Lobel P (2016) Accounting for protein subcellular localization: a compartmental map of the rat liver proteome. Molecular and Cellular Proteomics 16, 194-212. doi:10.1074/mcp.M116.064527 PMCID: PMC5294208
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