README.md

In moritzlindner/mousecolonytools: A collection of tools to facilitate genotyping and mouse colony management

mousecolonytools

mousecolonytools: A collection of tools to facilitate genotyping and mouse colony management

Installation

if (!requireNamespace("remotes", quietly = TRUE)){
  install.packages("remotes")
}
remotes::install_github("moritzlindner/mousecolonytools")

Description

This package contains a set of tools to facilitate mouse colony management. It is built to fit the needs of the lab but may also be helfpu to others.

Important functions are "sangergenotype", a function that can batch process .ab1 files obtained from Sanger-sequencing based genotyping experiments as well as a collection of functions that allows to easily generate kinship2 pedigrees from mouse colony datasheets generated with the colony management system TickAtLab.

moritzlindner/mousecolonytools documentation built on Aug. 6, 2023, 6:45 a.m.