anotherBkp | Get best candidate change point |
binMissingValues | binMissingValues |
defaultWeights | Compute default weights for the weighted group fused Lasso |
doCBS | Run CBS segmentation |
doDynamicProgramming | Run segmentation by dynamic programming |
doGFLars | Group fused Lars segmentation |
doPSCBS | Run Paired PSCBS segmentation |
doPSCN | Run PSCN segmentation (defunct) |
doRBS | Run RBS segmentation |
estimateSd | Robust standard deviation estimator |
Fpsn | Pruned dynamic programming algorithm |
getCopyNumberDataByResampling | Generate a copy number profile by resampling |
getTpFp | Calculate the number of true positives and false positives |
getUnivJ | Get the contribution of one dimension to the RSE. |
getUnivStat | Get the binary test statistic for one dimension |
jointSeg | Joint segmentation of multivariate signals |
leftMultiplyByInvXAtXA | leftMultiplyByInvXAtXA |
leftMultiplyByXt | leftMultiplyByXt |
mapPositionsBack | mapPositionsBack |
modelSelection | Model selection |
multiplyXtXBySparse | multiplyXtXBySparse |
oneBkp | Get best candidate change point |
plotSeg | Plot signal and breakpoints with segment-level signal... |
prof | profile time and memory usage of a given R expression |
pruneByDP | Exact segmentation of a multivariate signal using dynamic... |
PSSeg | Parent-Specific copy number segmentation |
randomProfile | Generate a random multi-dimensional profile with breakpoints... |
retour_sn | Extract endpoint matrix from DP result |
segmentByGFLars | Group fused Lars segmentation (low-level) |
segmentByRBS | Recursive Binary Segmentation (low-level) |
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