Joint Segmentation of Multivariate (Copy Number) Signals

anotherBkp | Get best candidate change point |

binMissingValues | binMissingValues |

defaultWeights | Compute default weights for the weighted group fused Lasso |

doCBS | Run CBS segmentation |

doDynamicProgramming | Run segmentation by dynamic programming |

doGFLars | Group fused Lars segmentation |

doPSCBS | Run Paired PSCBS segmentation |

doPSCN | Run PSCN segmentation (defunct) |

doRBS | Run RBS segmentation |

estimateSd | Robust standard deviation estimator |

Fpsn | Pruned dynamic programming algorithm |

getCopyNumberDataByResampling | Generate a copy number profile by resampling |

getTpFp | Calculate the number of true positives and false positives |

getUnivJ | Get the contribution of one dimension to the RSE. |

getUnivStat | Get the binary test statistic for one dimension |

jointSeg | Joint segmentation of multivariate signals |

leftMultiplyByInvXAtXA | leftMultiplyByInvXAtXA |

leftMultiplyByXt | leftMultiplyByXt |

mapPositionsBack | mapPositionsBack |

modelSelection | Model selection |

multiplyXtXBySparse | multiplyXtXBySparse |

oneBkp | Get best candidate change point |

plotSeg | Plot signal and breakpoints with segment-level signal... |

prof | profile time and memory usage of a given R expression |

pruneByDP | Exact segmentation of a multivariate signal using dynamic... |

PSSeg | Parent-Specific copy number segmentation |

randomProfile | Generate a random multi-dimensional profile with breakpoints... |

retour_sn | Extract endpoint matrix from DP result |

segmentByGFLars | Group fused Lars segmentation (low-level) |

segmentByRBS | Recursive Binary Segmentation (low-level) |

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