Description Usage Arguments Value
Internal. Runs all the iterations of consensus clustering.
1 2 | runAllIterations(dataMatrix, K, nIters, propSamples, clusterAlgorithm,
pathOutput, verbose, seed)
|
dataMatrix |
matrix or data frame with data to cluster, samples/items in the columns and features in the rows. |
K |
vector of integers representing numbeer of clusters to evaluate. It can be of length 1 and it does not need to consist of consecutive integers. For example, either of |
nIters |
number of iterations (bootstrap samples). |
propSamples |
proportion of items to sample in each bootstrap sample. |
clusterAlgorithm |
algorithm to perform the clustering, for the moment only K-means is available. |
pathOutput |
directory for output files and iterations progress report, the current working directory by default. |
verbose |
logical, print progress messages to screen. During the bootstrap iterations, a report to monitor the progress is created in |
seed |
numerical value to set random seed for reproducible results. It uses |
Vector with consensus index for each pair of samples.
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