mrc-ide/dust
Iterate Multiple Realisations of Stochastic Models

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Search the mrc-ide/dust package
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Functions
295
Source code
44
Man pages
15
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mrc-ide/dust: Iterate Multiple Realisations of Stochastic Models
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API

API for mrc-ide/dust
Iterate Multiple Realisations of Stochastic Models

Global functions
.onLoad Source code
`%||%` Source code
assert_file_exists Source code
assert_is Source code
build_compiler_options Source code
check_algorithm Source code
coef.dust Source code
coef.dust_generator Source code
compile_and_load Source code
cpp_openmp_info Source code
cpp_scale_log_weights Source code
cuda_check Source code
cuda_configuration Source code
cuda_create_test_package Source code
cuda_cub_path_default Source code
cuda_flag_helper Source code
cuda_install_cub Source code
cuda_options Source code
cuda_path_cub_include Source code
cuda_path_cuda_lib Source code
density_beta_binomial Source code
density_binomial Source code
density_negative_binomial_mu Source code
density_negative_binomial_prob Source code
density_normal Source code
density_poisson Source code
deparse_param Source code
drop_internal_comments Source code
drop_roxygen Source code
dust Man page Source code
dust_code Source code
dust_cpu_sir_alloc Source code
dust_cpu_sir_capabilities Source code
dust_cpu_sir_compare_data Source code
dust_cpu_sir_filter Source code
dust_cpu_sir_n_state Source code
dust_cpu_sir_ode_statistics Source code
dust_cpu_sir_reorder Source code
dust_cpu_sir_resample Source code
dust_cpu_sir_rng_state Source code
dust_cpu_sir_run Source code
dust_cpu_sir_run_adjoint Source code
dust_cpu_sir_set_data Source code
dust_cpu_sir_set_index Source code
dust_cpu_sir_set_n_threads Source code
dust_cpu_sir_set_rng_state Source code
dust_cpu_sir_set_stochastic_schedule Source code
dust_cpu_sir_simulate Source code
dust_cpu_sir_state Source code
dust_cpu_sir_time Source code
dust_cpu_sir_update_state Source code
dust_cpu_sirs_alloc Source code
dust_cpu_sirs_capabilities Source code
dust_cpu_sirs_compare_data Source code
dust_cpu_sirs_filter Source code
dust_cpu_sirs_n_state Source code
dust_cpu_sirs_ode_statistics Source code
dust_cpu_sirs_reorder Source code
dust_cpu_sirs_resample Source code
dust_cpu_sirs_rng_state Source code
dust_cpu_sirs_run Source code
dust_cpu_sirs_run_adjoint Source code
dust_cpu_sirs_set_data Source code
dust_cpu_sirs_set_index Source code
dust_cpu_sirs_set_n_threads Source code
dust_cpu_sirs_set_rng_state Source code
dust_cpu_sirs_set_stochastic_schedule Source code
dust_cpu_sirs_simulate Source code
dust_cpu_sirs_state Source code
dust_cpu_sirs_time Source code
dust_cpu_sirs_update_state Source code
dust_cpu_variable_alloc Source code
dust_cpu_variable_capabilities Source code
dust_cpu_variable_compare_data Source code
dust_cpu_variable_filter Source code
dust_cpu_variable_n_state Source code
dust_cpu_variable_ode_statistics Source code
dust_cpu_variable_reorder Source code
dust_cpu_variable_resample Source code
dust_cpu_variable_rng_state Source code
dust_cpu_variable_run Source code
dust_cpu_variable_run_adjoint Source code
dust_cpu_variable_set_data Source code
dust_cpu_variable_set_index Source code
dust_cpu_variable_set_n_threads Source code
dust_cpu_variable_set_rng_state Source code
dust_cpu_variable_set_stochastic_schedule Source code
dust_cpu_variable_simulate Source code
dust_cpu_variable_state Source code
dust_cpu_variable_time Source code
dust_cpu_variable_update_state Source code
dust_cpu_volatility_alloc Source code
dust_cpu_volatility_capabilities Source code
dust_cpu_volatility_compare_data Source code
dust_cpu_volatility_filter Source code
dust_cpu_volatility_n_state Source code
dust_cpu_volatility_ode_statistics Source code
dust_cpu_volatility_reorder Source code
dust_cpu_volatility_resample Source code
dust_cpu_volatility_rng_state Source code
dust_cpu_volatility_run Source code
dust_cpu_volatility_run_adjoint Source code
dust_cpu_volatility_set_data Source code
dust_cpu_volatility_set_index Source code
dust_cpu_volatility_set_n_threads Source code
dust_cpu_volatility_set_rng_state Source code
dust_cpu_volatility_set_stochastic_schedule Source code
dust_cpu_volatility_simulate Source code
dust_cpu_volatility_state Source code
dust_cpu_volatility_time Source code
dust_cpu_volatility_update_state Source code
dust_cpu_walk_alloc Source code
dust_cpu_walk_capabilities Source code
dust_cpu_walk_compare_data Source code
dust_cpu_walk_filter Source code
dust_cpu_walk_n_state Source code
dust_cpu_walk_ode_statistics Source code
dust_cpu_walk_reorder Source code
dust_cpu_walk_resample Source code
dust_cpu_walk_rng_state Source code
dust_cpu_walk_run Source code
dust_cpu_walk_run_adjoint Source code
dust_cpu_walk_set_data Source code
dust_cpu_walk_set_index Source code
dust_cpu_walk_set_n_threads Source code
dust_cpu_walk_set_rng_state Source code
dust_cpu_walk_set_stochastic_schedule Source code
dust_cpu_walk_simulate Source code
dust_cpu_walk_state Source code
dust_cpu_walk_time Source code
dust_cpu_walk_update_state Source code
dust_cuda_configuration Man page Source code
dust_cuda_options Man page Source code
dust_data Man page Source code
dust_example Man page Source code
dust_file Source code
dust_generate Man page Source code
dust_generator Man page
dust_gpu_sirs_alloc Source code
dust_gpu_sirs_capabilities Source code
dust_gpu_sirs_compare_data Source code
dust_gpu_sirs_filter Source code
dust_gpu_sirs_n_state Source code
dust_gpu_sirs_ode_statistics Source code
dust_gpu_sirs_reorder Source code
dust_gpu_sirs_resample Source code
dust_gpu_sirs_rng_state Source code
dust_gpu_sirs_run Source code
dust_gpu_sirs_run_adjoint Source code
dust_gpu_sirs_set_data Source code
dust_gpu_sirs_set_index Source code
dust_gpu_sirs_set_n_threads Source code
dust_gpu_sirs_set_rng_state Source code
dust_gpu_sirs_set_stochastic_schedule Source code
dust_gpu_sirs_simulate Source code
dust_gpu_sirs_state Source code
dust_gpu_sirs_time Source code
dust_gpu_sirs_update_state Source code
dust_gpu_variable_alloc Source code
dust_gpu_variable_capabilities Source code
dust_gpu_variable_compare_data Source code
dust_gpu_variable_filter Source code
dust_gpu_variable_n_state Source code
dust_gpu_variable_ode_statistics Source code
dust_gpu_variable_reorder Source code
dust_gpu_variable_resample Source code
dust_gpu_variable_rng_state Source code
dust_gpu_variable_run Source code
dust_gpu_variable_run_adjoint Source code
dust_gpu_variable_set_data Source code
dust_gpu_variable_set_index Source code
dust_gpu_variable_set_n_threads Source code
dust_gpu_variable_set_rng_state Source code
dust_gpu_variable_set_stochastic_schedule Source code
dust_gpu_variable_simulate Source code
dust_gpu_variable_state Source code
dust_gpu_variable_time Source code
dust_gpu_variable_update_state Source code
dust_header Source code
dust_logistic_gpu_info Source code
dust_ode_control Man page Source code
dust_ode_logistic_alloc Source code
dust_ode_logistic_capabilities Source code
dust_ode_logistic_compare_data Source code
dust_ode_logistic_filter Source code
dust_ode_logistic_n_state Source code
dust_ode_logistic_ode_statistics Source code
dust_ode_logistic_reorder Source code
dust_ode_logistic_resample Source code
dust_ode_logistic_rng_state Source code
dust_ode_logistic_run Source code
dust_ode_logistic_run_adjoint Source code
dust_ode_logistic_set_data Source code
dust_ode_logistic_set_index Source code
dust_ode_logistic_set_n_threads Source code
dust_ode_logistic_set_rng_state Source code
dust_ode_logistic_set_stochastic_schedule Source code
dust_ode_logistic_simulate Source code
dust_ode_logistic_state Source code
dust_ode_logistic_time Source code
dust_ode_logistic_update_state Source code
dust_openmp_support Man page Source code
dust_openmp_threads Man page Source code
dust_package Man page Source code
dust_prepare Source code
dust_repair_environment Man page Source code
dust_rewrite_real Source code
dust_rng Man page
dust_rng_alloc Source code
dust_rng_binomial Source code
dust_rng_cauchy Source code
dust_rng_distributed_pointer Man page Source code
dust_rng_distributed_state Man page Source code
dust_rng_exponential Source code
dust_rng_gamma Source code
dust_rng_hypergeometric Source code
dust_rng_jump Source code
dust_rng_long_jump Source code
dust_rng_multinomial Source code
dust_rng_nbinomial Source code
dust_rng_normal Source code
dust_rng_pointer Man page
dust_rng_pointer_init Source code
dust_rng_pointer_sync Source code
dust_rng_poisson Source code
dust_rng_random_normal Source code
dust_rng_random_real Source code
dust_rng_state Source code
dust_rng_uniform Source code
dust_sir_gpu_info Source code
dust_sirs_gpu_info Source code
dust_template_data Source code
dust_variable_gpu_info Source code
dust_volatility_gpu_info Source code
dust_walk_gpu_info Source code
dust_workdir Source code
generate_dust Source code
glue_whisker Source code
has_openmp_compiler Source code
has_openmp_compiler_test Source code
hash_file Source code
is_call Source code
is_directory Source code
is_integer_like Source code
is_valid_cpp_std Source code
load_temporary_package Source code
openmp_check_limit Source code
openmp_info Source code
package_generate Source code
package_validate Source code
package_validate_destination Source code
package_validate_has_dep Source code
package_validate_makevars_openmp Source code
package_validate_namespace Source code
package_validate_namespace_usedynlib Source code
parse_code_has_gpu_support Source code
parse_metadata Source code
parse_metadata_class Source code
parse_metadata_describe Source code
parse_metadata_guess_class Source code
parse_metadata_has_gpu_support Source code
parse_metadata_name Source code
parse_metadata_param Source code
parse_metadata_param1 Source code
parse_metadata_simple Source code
parse_metadata_time_type Source code
read_lines Source code
same_content Source code
set_names Source code
squote Source code
substitute_dust_template Source code
substitute_template Source code
test_cuda_pars Source code
test_interpolate_constant1 Source code
test_interpolate_linear1 Source code
test_interpolate_search Source code
test_interpolate_spline1 Source code
test_rng_pointer_get Source code
test_xoshiro_run Source code
validate_cpp_std Source code
vcapply Source code
writelines_if_changed Source code
mrc-ide/dust documentation built on Oct. 6, 2023, 8:26 a.m.

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