Man pages for mrc-ide/epihawkes
Hawkes Processes model for outbreak analysis

all_roots	Finds all roots of a function within an interval
compute_count_function	Computes count function over time
compute_integral_limits	Computes total integral
compute_intensity_function	Computes intensity function at N equally spaced points
compute_lambda	Compute value of intensity function
compute_ray_deriv_delta	Computes directional derivatives wrt delta
conditional_intensity	Compute conditional intensity of events at time time
conditional_intensity_list	Computes conditional intensity for a list of events and times
exp_derivatives	Computes directional derivatives for exponential kernel
exp_kernel	Exponential kernel function
find_zero_mu_sinusoidal_linear_turning_points	Finds points at which turning points are zero for specific...
find_zero_mu_turning_points	Finds points at which turning points are zero
hawkes_simulation	Hawkes process simulation
integral_intensity	Computes term two of the log likelihood
int_exp	Integral of exponential kernel function between T_max and 0
int_ray	Integral of Rayleigh kernel function between T_max and 0
max_lambda	Compute lambda_max - maximum intensity at a given time
max_mu	Compute time of maximum intensity of mu
mu_constant	Constant mu function
mu_diff_constant	Differential of constant mu function wrt time
mu_diff_linear	Differential of linear mu function wrt t
mu_diff_none	Differntial of no mu function wrt t
mu_diff_quadratic	Differential of quadratic mu function
mu_diff_sinusoidal	Differential of sinusoidal mu function
mu_diff_sinusoidal_constant	Differential of constant and sinusoidal mu function wrt t
mu_diff_sinusoidal_linear	Differential of linear and sinusoidal mu function wrt t
mu_diff_sinusoidal_linear_period	Differential of linear and sinusoidal mu function wrt t with...
mu_int_constant	Integral of constant mu function
mu_int_linear	Integral of linear mu function
mu_int_none	Integral of no mu function
mu_int_quadratic	Integral of quadratic mu function wrt t
mu_int_sinusoidal	Integral of sinusoidal mu function
mu_int_sinusoidal_constant	Integral of constant and sinusoidal mu function
mu_int_sinusoidal_linear	Integral of linear and sinusoidal mu function
mu_int_sinusoidal_linear_period	Integral of linear and sinusoidal mu function with varying P
mu_linear	Linear mu function
mu_none	No mu function
mu_quadratic	Quadratic mu function
mu_sinusoidal	Sinusoidal mu function
mu_sinusoidal_constant	Constant and sinusoidal mu function
mu_sinusoidal_linear	Linear and sinusoidal mu function
mu_sinusoidal_linear_period	Linear and sinusoidal mu function with varying P
neg_log_likelihood	Negative log likelihood
plot_decay_kernel	Plot the decay kernel
plot_events	Plot events as counting process
plot_intensity	Plot force of infection
plot_intensity_imported	Plot force of infection for imported events
print_message	Logger function
ray_derivatives	Computes directional derivatives for Rayleigh kernel
ray_hessian	Computes hessian for Rayleigh kernel
ray_kernel	Rayleigh kernel function
simulate_next_event	Simulate next event