Files in mrc-ide/eppasm
Age-structured EPP Model for HIV Epidemic Estimates
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/aggregate-fits.R
R/cluster-functions.R
R/directincid.R
R/eppasm-outputs.R
R/eppasm.R
R/fit-model.R
R/generics.R
R/imis.R
R/infections.R
R/likelihood.R
R/likelihood_ancsite.R
R/model-outputs.R
R/outpred.R
R/plot.R
R/plot2.R
R/plot_agefit.R
R/plot_output.R
R/read-spectrum-files.R
R/read-spectrum-pop1.R
R/rt-models.R
R/specres-functions.R
R/spectrum.R
R/sysdata.rda
R/tidy-outputs.R
README.Rmd
README.md
codecov.yml
data-raw/CountryListMaster.csv
data-raw/CountryListMaster_2024-06-15.csv
data-raw/iso.csv
data-raw/spectrum-country-list.R
data-raw/subp-gfr-estimates.R
data-raw/test-pjnz.R
dev/dev-ageincid.R
inst/extdata/testpjnz/Botswana2017.PJNZ
inst/extdata/testpjnz/Botswana2018.PJNZ
inst/extdata/testpjnz/DominicanRepublic2017.PJNZ
inst/extdata/testpjnz/Mozambique_Maputo_Cidade2018.PJNZ
inst/extdata/testpjnz/Netherlands2017.PJNZ
man/agemx.spec.Rd
man/agepregartcov.Rd
man/agepregprev.Rd
man/ageprev.Rd
man/ancsite_pred_df.Rd
man/calc_infections_eppspectrum.Rd
man/create_spectrum_fixpar.Rd
man/get_proj_years.Rd
man/hivpop_singleage.Rd
man/imis.Rd
man/incid.Rd
man/incid15to49_eppinput_specres.Rd
man/ll_ancsite_conditional.Rd
man/ll_hhsage.Rd
man/ll_hhsage_binom.Rd
man/ll_hhsartcov.Rd
man/ll_hhsincid.Rd
man/melt_ancsite_data.Rd
man/mod_dimnames.Rd
man/natagemx.spec.Rd
man/prepare_ancsite_likdat.Rd
man/prepare_directincid.Rd
man/prepare_hhsageprev_likdat.Rd
man/prepare_hhsartcov_likdat.Rd
man/prepare_hhsincid_likdat.Rd
man/prepare_rhybrid.Rd
man/prepare_spec_fit.Rd
man/read_csavr_data.Rd
man/read_dp.Rd
man/read_incid_input.Rd
man/read_pop1.Rd
man/sample_ancsite_pred.Rd
man/sample_b_site.Rd
man/sample_invgamma_post.Rd
man/simmod.Rd
man/spec_add_dimnames.Rd
src/eppasm.cpp
src/functions.c
tests/testthat.R
tests/testthat/test_ll.R
tests/testthat/test_rvec.R
tests/testthat/test_simmod.R
tests/testthat/test_specfp.R
vignettes_src/eppasm-basic-example.Rmd
vignettes_src/eppasm-spectrum-workflow.Rmd
