read_pop1: Read Spectrum _pop1.xlsx export file
In mrc-ide/eppasm: Age-structured EPP Model for HIV Epidemic Estimates
View source: R/read-spectrum-pop1.R
read_pop1 R Documentation
Read Spectrum _pop1.xlsx export file
Description
Spectrum has a debug mode option to output a file recording
the entire state space when a model simulation is computed.
This function parse the *_pop1.xlsx file into long-format
data.frame.
Usage
read_pop1(pop1file, country, years = 2000:2021)
Arguments
pop1file
path to *_pop1.xlsx export file
country
string giving the identifying country / region
name to be added as a column in the output file
years
integer vector of years to extract
Details
TODO: tidy up the dependencies in this function: reshape, pryr, readxl.
TODO: Insert instructions for how to enter Spectrum debug mode.
'years' must be in the file as sheets, but this is not currently checked.
It will fail hard. Inserting a check for this would make it fail softer.
Value
A data.frame consisting of pop1 file in long format
mrc-ide/eppasm documentation built on March 25, 2024, 9:19 p.m.
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View source: R/read-spectrum-pop1.R
| read_pop1 | R Documentation |
Read Spectrum _pop1.xlsx export file
Description
Spectrum has a debug mode option to output a file recording the entire state space when a model simulation is computed. This function parse the *_pop1.xlsx file into long-format data.frame.
Usage
read_pop1(pop1file, country, years = 2000:2021)
Arguments
pop1file |
path to *_pop1.xlsx export file |
country |
string giving the identifying country / region name to be added as a column in the output file |
years |
integer vector of years to extract |
Details
TODO: tidy up the dependencies in this function: reshape, pryr, readxl.
TODO: Insert instructions for how to enter Spectrum debug mode.
'years' must be in the file as sheets, but this is not currently checked. It will fail hard. Inserting a check for this would make it fail softer.
Value
A data.frame consisting of pop1 file in long format
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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