GeoMAPI_get_significant: Get GeoMAPI significant cells
In mrc-ide/genescaper: Allele frequency mapping and outlier detection

GeoMAPI_get_significant

R Documentation

Get GeoMAPI significant cells

Given a completed GeoMAPI analysis, identify which cells are significant outliers.

GeoMAPI_get_significant(
  project,
  test_tail = "both",
  FDR = 0.05,
  min_coverage = 10,
  silent = FALSE
)

`project`	a genescaper project, as produced by the `genescaper_project()` function.
`test_tail`	whether to calculate empirical p-values using a one-sided test (`test_tail = "left"` or `test_tail = "right"`) or a two-sided test (`test_tail = "both"`).
`FDR`	the false discovery rate, i.e. the probability that a cell identified as significant is actually a false positive.
`min_coverage`	minimum coverage (number of edges assigned to a cell) for it to be included in the final result.
`silent`	TODO