Global functions | |
---|---|
.human_blood_meal_rate | Source code |
AL_params | Man page |
CorrelationParameters | Man page |
DHA_PQP_params | Man page |
SP_AQ_params | Man page |
account_for_tbv | Source code |
adult_mosquito_model_restore_state | Source code |
adult_mosquito_model_save_state | Source code |
adult_mosquito_model_update | Source code |
approx_sum | Source code |
aquatic_mosquito_model_update | Source code |
arab_params | Man page |
asymptomatic_infectivity | Source code |
attach_pev_dose_listeners | Source code |
average_p_repelled | Source code |
average_p_successful | Source code |
bednet_decay | Source code |
bernoulli | Source code |
bernoulli_multi_p | Source code |
bernoulli_multi_p_cpp | Source code |
between | Source code |
biting_effects_individual | Source code |
bitset_at | Source code |
bitset_index | Source code |
bitset_index_cpp | Source code |
blood_immunity | Source code |
blood_meal_rate | Source code |
boost_immunity | Source code |
calculate_R_bar | Source code |
calculate_TBA | Source code |
calculate_TRA | Source code |
calculate_asymptomatic_detectable | Source code |
calculate_carrying_capacity | Man page Source code |
calculate_clinical_infections | Source code |
calculate_eir | Source code |
calculate_eq | Source code |
calculate_foim | Source code |
calculate_infections | Source code |
calculate_infectious | Source code |
calculate_infectious_compartmental | Source code |
calculate_infectious_individual | Source code |
calculate_initial_ages | Source code |
calculate_initial_counts | Source code |
calculate_omega | Source code |
calculate_pev_antibodies | Source code |
calculate_pev_efficacy | Source code |
calculate_successful_treatments | Source code |
calculate_tbv_antibodies | Source code |
calculate_treated | Source code |
calculate_zeta | Source code |
carrying_capacity | Source code |
clinical_immunity | Source code |
create_adult_mosquito_model | Source code |
create_adult_solver | Source code |
create_age_group_renderer | Source code |
create_age_variable_mean_renderer_process | Source code |
create_aquatic_mosquito_model | Source code |
create_aquatic_solver | Source code |
create_biting_process | Source code |
create_compartmental_rendering_process | Source code |
create_dosage_renderer | Source code |
create_epi_pev_process | Source code |
create_events | Source code |
create_exponential_decay_process | Source code |
create_export_variable | Source code |
create_lagged_eir | Source code |
create_lagged_infectivity | Source code |
create_mass_pev_listener | Source code |
create_mda_listeners | Source code |
create_mortality_process | Source code |
create_mosquito_emergence_process | Source code |
create_pev_booster_listener | Source code |
create_pev_efficacy_listener | Source code |
create_pev_profile | Man page Source code |
create_pmc_process | Source code |
create_prevalence_renderer | Source code |
create_processes | Source code |
create_progress_process | Man page Source code |
create_progression_rates_process | Source code |
create_seasonal_booster_scheduler | Source code |
create_solver_stepping_process | Source code |
create_tbv_listener | Source code |
create_timeseries | Source code |
create_total_M_renderer_compartmental | Source code |
create_transmission_mixer | Source code |
create_variable_mean_renderer_process | Source code |
create_variables | Source code |
create_vector_count_renderer_individual | Source code |
death_rate | Source code |
distribute_nets | Source code |
effective_biting_rates | Source code |
eggs_laid | Source code |
equilibrium_total_M | Source code |
exponential_process_cpp | Source code |
fast_weighted_sample | Source code |
find_birthrates | Man page Source code |
fun_params | Man page |
gamb_params | Man page |
get_age | Source code |
get_antimalarial_resistance_parameters | Man page Source code |
get_correlation_parameters | Man page Source code |
get_equilibrium_population | Source code |
get_gonotrophic_cycle | Source code |
get_human_population | Source code |
get_init_carrying_capacity | Man page Source code |
get_parameters | Man page Source code |
get_treatment_coverages | Source code |
human_blood_meal_rate | Source code |
human_pi | Source code |
in_age_range | Source code |
incidence_probability_renderer | Source code |
incidence_renderer | Source code |
indoor_spraying | Source code |
infection_outcome_process | Source code |
initial_immunity | Source code |
initial_mosquito_counts | Source code |
initial_state | Source code |
intervention_coefficient | Source code |
inverse_param | Source code |
invlogit | Source code |
itexp | Source code |
log_uniform | Source code |
match_timestep | Source code |
mean_param | Source code |
net_usage_renderer | Source code |
parameter_draws | Man page |
parameterise_mosquito_equilibrium | Man page Source code |
parameterise_mosquito_models | Source code |
parameterise_solvers | Source code |
parameterise_total_M | Man page Source code |
peak_season_offset | Man page Source code |
populate_incidence_rendering_columns | Source code |
populate_metapopulation_incidence_rendering_columns | Source code |
prob_bitten | Source code |
prob_repelled_bednets | Source code |
prob_spraying_repels | Source code |
prob_survives_bednets | Source code |
prob_survives_spraying | Source code |
prob_to_rate | Source code |
probability_of_detection | Source code |
progression_outcome_process | Source code |
r21_booster_profile | Man page |
r21_profile | Man page |
rainfall | Source code |
random_restore_state | Source code |
random_save_state | Source code |
random_seed | Source code |
rate_to_prob | Source code |
rcondmvnorm | Source code |
rdt_detectable | Source code |
remove_keys | Source code |
remove_unused_equilibrium | Source code |
render_initial_incidence | Source code |
reset_target | Source code |
rtexp | Source code |
rtss_booster_profile | Man page |
rtss_profile | Man page |
run_metapop_simulation | Man page Source code |
run_resumable_simulation | Man page Source code |
run_simulation | Man page Source code |
run_simulation_with_repetitions | Man page |
sample_bitset | Source code |
sample_intervention | Source code |
sample_maternal_immunity | Source code |
sample_pev_param | Source code |
schedule_infections | Source code |
schedule_vaccination | Source code |
set_antimalarial_resistance | Man page Source code |
set_bednets | Man page Source code |
set_carrying_capacity | Man page Source code |
set_clinical_treatment | Man page Source code |
set_demography | Man page Source code |
set_drugs | Man page Source code |
set_epi_outputs | Man page Source code |
set_equilibrium | Man page Source code |
set_mass_pev | Man page Source code |
set_mda | Man page Source code |
set_parameter_draw | Man page Source code |
set_pev_epi | Man page Source code |
set_pmc | Man page Source code |
set_smc | Man page Source code |
set_species | Man page Source code |
set_spraying | Man page Source code |
set_tbv | Man page Source code |
severe_immunity | Source code |
simulate_bites | Source code |
simulate_infection | Source code |
solver_get_states | Source code |
solver_set_states | Source code |
solver_step | Source code |
spraying_decay | Source code |
steph_params | Man page |
throw_away_nets | Source code |
time_cached | Source code |
timeseries_at | Source code |
timeseries_push | Source code |
timeseries_restore_state | Source code |
timeseries_save_state | Source code |
to_char_vector | Source code |
translate_equilibrium | Source code |
translate_parameters | Source code |
unique_biting_rate | Source code |
update_infection | Source code |
update_mass_drug_admin | Source code |
update_severe_disease | Source code |
update_to_asymptomatic_infection | Source code |
vcapply | Source code |
vlapply | Source code |
vnapply | Source code |
weibull_survival | Source code |
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