Man pages for mrc-ide/malariasimulation
An individual based model for malaria
| AL_params | Preset parameters for the AL drug (P. falciparum) |
| arab_params | Preset parameters for the An. arabiensis vector |
| calculate_carrying_capacity | Calculate the vector carrying capacity |
| CorrelationParameters | Class: Correlation parameters |
| CQ_params_vivax | Preset parameters for the CQ drug (P. vivax) |
| CQ_PQ_params_vivax | Preset parameters for the CQ-PQ drug (P. vivax) |
| CQ_TQ_params_vivax | Preset parameters for the CQ-TQ drug (P. vivax) |
| create_pev_profile | create a PEV profile |
| create_progress_process | Create progress process |
| DHA_PQP_params | Preset parameters for the DHA-PQP drug (P. falciparum) |
| find_birthrates | Calculate the birthrate for a population in equilibrium |
| fun_params | Preset parameters for the An. funestus vector |
| gamb_params | Preset parameters for the An. gambiae s.s vector |
| get_antimalarial_resistance_parameters | Retrieve resistance parameters |
| get_correlation_parameters | Get default correlation parameters |
| get_init_carrying_capacity | Get initialised carrying capacity for each species |
| get_parameters | Get model parameters |
| kol_params | Preset parameters for the An. koliensis vector |
| parameter_draws_pf | Parameter draws (P. falciparum) |
| parameter_draws_pv | Parameter draws (P. vivax) |
| parameterise_mosquito_equilibrium | Parameterise total_M and carrying capacity for mosquitos from... |
| parameterise_total_M | Parameterise total_M |
| parasite_parameters | Parasite parameters |
| peak_season_offset | Calculate the yearly offset (in timesteps) for the peak... |
| r21_booster_profile | R21 booster vaccine profile |
| r21_profile | R21 vaccine profile |
| rtss_booster_profile | RTS,S booster vaccine profile |
| rtss_profile | RTS,S vaccine profile |
| run_metapop_simulation | Run a metapopulation model |
| run_resumable_simulation | Run the simulation in a resumable way |
| run_simulation | Run the simulation |
| run_simulation_with_repetitions | Run the simulation with repetitions |
| set_antimalarial_resistance | Parameterise antimalarial resistance |
| set_bednets | Parameterise a bed net strategy |
| set_carrying_capacity | Parameterise custom baseline carrying capacity |
| set_clinical_treatment | Parameterise clinical treatment |
| set_demography | Parameterise variable deathrates |
| set_drugs | Parameterise drugs to use in the model |
| set_epi_outputs | Parameterise age grouped output rendering |
| set_equilibrium | Set equilibrium |
| set_mass_pev | Parameterise a vaccine mass distribution strategy |
| set_mda | Parameterise a Mass Drug Administration |
| set_parameter_draw | Use parameter draw from the join posterior |
| set_pev_epi | Parameterise a pre-erythrocytic vaccine with an EPI strategy |
| set_pmc | Parameterise a perennial malaria chemoprevention (PMC,... |
| set_smc | Parameterise a Seasonal Malaria Chemoprevention |
| set_species | Parameterise the mosquito species to use in the model |
| set_spraying | Parameterise an indoor spraying strategy |
| set_tbv | Parameterise an TBV strategy |
| SP_AQ_params | Preset parameters for the SP-AQ drug (P. falciparum) |
| steph_params | Preset parameters for the An. stephensi vector |
