dummy_data: Dummy data

In mrc-ide/mipmapper: Filtering and analysis of MIP panel genetic datasets

Description

Create a dummy data set

Usage

dummy_data()

Details

Fixed dummy data set. Mainly used for tests. For a more nuanced dummy data set creation see generate_dummy_data.

Value

Invisibly returns a MIP dataset with the following variables:

• "Year" Numerics of sample year collect

• "Country" String of country of sample collection

• "Study" String of study name

• "DHS_Cluster" Numeric of DHS cluster

• "Lat" Numeric for latitude

• "Long" Numeric for longitude

• "Sample_ID" String for unique sample ID

• "Chrom" Numeric for chromosome number

• "Pos" Numeric for chromosome position

• "Ref" Reference allele nucleotide

• "Alt" Alternative allele nucleotide

• "Coverage" Numeric for read coverage

• "Barcode_Count" Numeric for count of barcodes matched to Ref

Examples

dat <- dummy_data()

mrc-ide/mipmapper documentation built on May 20, 2019, 3:27 p.m.