run_synthetic_simulations: Run synthetic simulations

In mrc-ide/msio: Malariasimulation Input Output

Run synthetic simulations

Description

Run synthetic simulations

Usage

run_synthetic_simulations(
  node = 1,
  n_years = 5,
  warmup = 5,
  reps = 10,
  paramset = basic_params,
  seed = 42,
  sites = NULL,
  interventions = "nets",
  batch_size = 1,
  n_batches = 1,
  outdir = ".",
  outputs = "prev",
  aggregation = "daily",
  synthetic_intervention_method = "lhs",
  human_population = 1e+05,
  seasonality_output = "daily"
)

Arguments

node	an arbitrary number, useful for tracking multiple executions
n_years	number of years to simulate
warmup	number of years to warm up for
paramset	a list of parameters from sample.R
seed	random seed
interventions	vector of interventions to include
batch_size	number of runs per batch
n_batches	number of batches
outdir	directory to save outputs
outputs	character vector of outputs to include
aggregation	type of aggregation for outputs, either 'daily' or 'yearly'

mrc-ide/msio documentation built on Aug. 27, 2022, 11:16 p.m.