Files in mrc-ide/spatialbranchr
Spatially explicit branching process model
.Rbuildignore
.github/.gitignore
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/data.R
R/fit.R
R/force_of_infection.R
R/process_fit.R
R/project.R
R/spatialbranchr-package.R
R/stanmodels.R
R/utils.R
README.md
_pkgdown.yml
configure
configure.win
data/metadata.rda
data/promed_ebola.rda
docs/404.html
docs/LICENSE-text.html
docs/articles/estimate-joint.html
docs/articles/index.html
docs/articles/simulating-data.html
docs/articles/simulating-data_files/figure-html/unnamed-chunk-3-1.png
docs/articles/simulating-data_files/figure-html/unnamed-chunk-5-1.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/as_dataframe.html
docs/reference/force_of_infection.html
docs/reference/index.html
docs/reference/make_rindex.html
docs/reference/metadata.html
docs/reference/process_spatial_estimate.html
docs/reference/promed_ebola.html
docs/reference/sd2.html
docs/reference/spatial_estimate.html
docs/reference/spatial_estimater.html
docs/reference/spatial_priors.html
docs/reference/spatial_project.html
docs/reference/spatialbranchr-package.html
docs/reference/summarise_projections.html
docs/sitemap.xml
inst/include/stan_meta_header.hpp
inst/stan/estimate_both.stan
inst/stan/estimate_rt.stan
inst/stan/include/license.stan
man/as_dataframe.Rd
man/force_of_infection.Rd
man/make_rindex.Rd
man/metadata.Rd
man/process_spatial_estimate.Rd
man/promed_ebola.Rd
man/sd2.Rd
man/spatial_estimate.Rd
man/spatial_priors.Rd
man/spatial_project.Rd
man/spatialbranchr-package.Rd
man/summarise_projections.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/stanExports_estimate_both.cc
src/stanExports_estimate_both.h
src/stanExports_estimate_rt.cc
src/stanExports_estimate_rt.h
tests/testthat.R
tests/testthat/test_fit.R
vignettes/.gitignore
vignettes/estimate-joint.Rmd
vignettes/simulating-data.Rmd
