spatialbranchr: Spatially explicit branching process model

#' Processed data on the 2013–2016 West African Ebola epidemic
#'
#' @description
#'
#' This data set gives the daily incidence of
#' Ebola cases (includes suspected and confirmed cases)
#' for each country in Africa. Note that most of the
#' countries did not experience any Ebola cases in
#' this epidemic. The '0s' have been filled in
#' for convenience. The raw data were colleced by
#' ProMED and the pre-processing pipeline has been
#' described in detail elsewhere (See linked paper).
#'
#' @name promed_ebola
#' @docType data
#' @format A dataframe consisting of 656 rows and 56 columns. The
#' first column consists of dates and the remaining 55 columns contain
#' the incidence of Ebola cases for each country on the African mainland.
#' Column names are the ISO3 country codes of countries.
#'
#' @source Bhatia, S., Lassmann, B., Cohn, E. et al. Using digital surveillance tools for near real-time mapping of the risk of infectious disease spread. npj Digit. Med. 4, 73 (2021). https://doi.org/10.1038/s41746-021-00442-3
#' @md
#' @references
#'
#' Bhatia, S., Lassmann, B., Cohn, E. et al. Using digital surveillance tools for near real-time mapping of the risk of infectious disease spread. npj Digit. Med. 4, 73 (2021). https://doi.org/10.1038/s41746-021-00442-3
#'
#'
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#' Centroids and populations of all countries
#'
#' @description
#'
#' This data set gives the latitudes and longitudes for the
#' centroids of all countries on the African mainland. Also included are population
#' sizes. These data are needed to jointly estimate
#' reproduction numbers and parameters of movement
#' model in the spatially explicit brancing process
#' model implemented in this package.
#' @name metadata
#' @docType data
#' @format A dataframe consisting of 55 rows and 23 columns. The
#' columns of interest are Centroid_Lon, Centroid_Lat, and Pop
#'
#'
#'
#' @source LandScan 2015 dataset grid
#' @md
#' @references
#'
#' Bhatia, S., Lassmann, B., Cohn, E. et al. Using digital surveillance tools for near real-time mapping of the risk of infectious disease spread. npj Digit. Med. 4, 73 (2021). https://doi.org/10.1038/s41746-021-00442-3
#'
#'
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