excess_log_likelihood_vaccine: Likelihood function for excess mortality with fitted vaccine...

In mrc-ide/squire.page: Functions used in global-lmic-reports-orderly and other repos

Likelihood function for excess mortality with fitted vaccine parameters Not for individual use, only exported so it is easy to call in pmcmc functions.

Description

Likelihood function for excess mortality with fitted vaccine parameters Not for individual use, only exported so it is easy to call in pmcmc functions.

Usage

excess_log_likelihood_vaccine(
  pars,
  data,
  squire_model,
  model_params,
  pars_obs,
  n_particles,
  forecast_days = 0,
  return = "ll",
  Rt_args,
  interventions,
  ...
)

Arguments

pars	Parameter inputs
data	data to fit to
squire_model	the model object
model_params	the fixed parameters
pars_obs	extra non fitted parameters
n_particles	unused
forecast_days	unused
return	Specifies we are return likelihood for model outputs
Rt_args	parameters for Rt
interventions	parameters around vaccination
...	unused (for compatibility)

mrc-ide/squire.page documentation built on May 27, 2023, 11:20 a.m.