README.md

In mridulaprasad/CorrDrugTumorMSI: A pipeline to combine drug distribution with tumor tissue-types in mass spectrometry imaging (MSI) data

CorrDrugTumorMSI

A R package to correlate drug distribution with tumor tissue types in mass spectrometry imaging (MSI) data.

Description

CorreDrugTumorMSI provides a complete analysis pipeline to analyze untargeted drug mass spectrometry imaging (MSI) data. The main functionality of the package includes: preprocessing of MSI data, identified unsupervised clusters, create a drug spatial map, quantitative analysis of identified clusters and drug spatial map and selection of spatially relevant molecular ions from the identified clusters. For further details see the package vignette

Installation

• Install HomogenMSI: In the shell type

library(devtools)
install_github("mridulaprasad/CorrDrugTumorMSI", dependencies = TRUE) 

• To additionally build the vignette the previous command should include build_vignettes = TRUE

library(devtools)
install_github("mridulaprasad/CorrDrugTumorMSI", dependencies = TRUE, build_vignettes = TRUE) 

• Load the package: In shell type

library(CorrDrugTumorMSI)

mridulaprasad/CorrDrugTumorMSI documentation built on Oct. 26, 2020, 5:45 a.m.