response.plot: Compute and plot a single response variable

In mrmaxent/maxnet: Fitting 'Maxent' Species Distribution Models with 'glmnet'

Compute and plot a single response variable

Description

Compute and plot a single response variable

Usage

response.plot(
  mod,
  v,
  type,
  mm = mod$samplemeans,
  min = mod$varmin[v],
  max = mod$varmax[v],
  levels = unlist(mod$levels[v]),
  plot = T,
  xlab = v,
  ylab = tools::toTitleCase(type),
  N = 100,
  ...
)

Arguments

mod	a fitted model, must be of type maxnet if default values used for other arguments.
v	charvacter, name of variable to be plotted.
type	character, type of response to plot on y-axis.
mm	numeric, sample means (or majorities for factors) for predictors; predictors other than v are given these values.
min	numeric, minimum value of v; determines range of x-axis
max	numeric, maximum value of v; determines range of x-axis
levels	vector, if v is a factor, determines levels to be plotted
plot	logical, if TRUE render the plot (or barplot) if FALSE then compute the response and return a data.frame
xlab	character, label for x-axis
ylab	character, label for y-axis
N	numeric, the number of intervals over which to sample the response
...	other argument passed to plot or barplot

Value

if plot is FALSE a data frame that contains variable and response columns otherwise NULL invisibly

See Also

plot.maxnet

mrmaxent/maxnet documentation built on Jan. 12, 2023, 8:20 a.m.