HVFInfo.SCTAssay: Get Variable Feature Information

In mrod0101/seurat: Tools for Single Cell Genomics

Description

Get variable feature information from SCTAssay objects

Usage

## S3 method for class 'SCTAssay'
HVFInfo(object, selection.method, status = FALSE, ...)

Arguments

object	An object
selection.method	Which method to pull. For HVFInfo and VariableFeatures, choose one from one of the following: “vst” “sctransform” or “sct” “mean.var.plot”, “dispersion”, “mvp”, or “disp” For SVFInfo and SpatiallyVariableFeatures, choose from: “markvariogram” “moransi”
status	Add variable status to the resulting data frame
...	Arguments passed to other methods

See Also

HVFInfo

Examples

# Get the HVF info directly from an SCTAssay object
pbmc_small <- SCTransform(pbmc_small)
HVFInfo(pbmc_small[["SCT"]], selection.method = 'sct')[1:5, ]

mrod0101/seurat documentation built on March 2, 2022, 12:17 a.m.