Read10X_Image: Load a 10X Genomics Visium Image
In mrod0101/seurat: Tools for Single Cell Genomics
Description
Usage
Arguments
Value
See Also
View source: R/preprocessing.R
Description
Load a 10X Genomics Visium Image
Usage
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Read10X_Image(
image.dir,
image.name = "tissue_lowres_image.png",
filter.matrix = TRUE,
...
)
Arguments
image.dir
Path to directory with 10X Genomics visium image data;
should include files tissue_lowres_image.png,
image.name
The file name of the image. Defaults to tissue_lowres_image.png.
scalefactors_json.json and tissue_positions_list.csv
filter.matrix
Filter spot/feature matrix to only include spots that
have been determined to be over tissue.
...
Ignored for now
Value
A VisiumV1 object
See Also
mrod0101/seurat documentation built on March 2, 2022, 12:17 a.m.
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Description Usage Arguments Value See Also
View source: R/preprocessing.R
Description
Load a 10X Genomics Visium Image
Usage
1 2 3 4 5 6 | Read10X_Image(
image.dir,
image.name = "tissue_lowres_image.png",
filter.matrix = TRUE,
...
)
|
Arguments
image.dir |
Path to directory with 10X Genomics visium image data;
should include files |
image.name |
The file name of the image. Defaults to tissue_lowres_image.png.
|
filter.matrix |
Filter spot/feature matrix to only include spots that have been determined to be over tissue. |
... |
Ignored for now |
Value
A VisiumV1 object
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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