benchmark/DropTip.R
In ms609/TreeTools: Create, Modify and Analyse Phylogenetic Trees
ub <- microbenchmark::microbenchmark
pv <- profvis::profvis
devtools::load_all()
set.seed(100)
tree <- rtree(100)
unif <- tree
unif$edge.length <- NULL
ub(DropTip(tree, 5), DropTip(unif, 5)) # edge lengths = 10x slower
pv(replicate(10000, DropTip.phylo(tree, 5))) # Bottleneck: path_lengths
ms609/TreeTools documentation built on April 12, 2025, 4:51 p.m.
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ub <- microbenchmark::microbenchmark
pv <- profvis::profvis
devtools::load_all()
set.seed(100)
tree <- rtree(100)
unif <- tree
unif$edge.length <- NULL
ub(DropTip(tree, 5), DropTip(unif, 5)) # edge lengths = 10x slower
pv(replicate(10000, DropTip.phylo(tree, 5))) # Bottleneck: path_lengths
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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