post_gate: Post-gate debris labeling

In msenosain/denoisingCTF: CyTOF Data Noise Removal R Package

Description

This function compares the pre-gated files with the gated files and adds the label of noise and cells to the events in each file. Then it uses BalancedSample and TrainTest to generate a class-balanced training and test sets. The working directory should be the folder that contains the gated files and the pre-gated files should be one directory up.

Usage

post_gate(bsample = 5000, path_pregated = "../")

Arguments

bsample	A numeric vector. Size of the sample from each class for to be passed to BalancedSample function.
path_pregated	A character vector with full path names. Default is the one directory up.

msenosain/denoisingCTF documentation built on Jan. 28, 2021, 2:23 a.m.