backbone_tree: Drops, all but one taxa from a monophyletic clade, keeps the...
In mshakya/Phamer: A package to support Phame outputs
Description
Usage
Arguments
Value
Description
Drops, all but one taxa from a monophyletic clade, keeps the info on total number of taxa
Usage
1
backbone_tree(df, phy, size = TRUE, backbone = TRUE)
Arguments
df
A dataframe with two columns, first column has taxa name matching phy, and second column has its group affiliation.
phy
A tree object.
size
If set to TRUE draws clades proportional to number of taxa. If FALSE, draws clades that are of same size. (default=TRUE)
backbone
If set to TRUE return backbone tree, else returns a regular tree with dropped branches. (default=TRUE)
Value
A backbone tree with
mshakya/Phamer documentation built on May 6, 2019, 2:33 p.m.
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Description Usage Arguments Value
Description
Drops, all but one taxa from a monophyletic clade, keeps the info on total number of taxa
Usage
1 | backbone_tree(df, phy, size = TRUE, backbone = TRUE)
|
Arguments
df |
A dataframe with two columns, first column has taxa name matching phy, and second column has its group affiliation. |
phy |
A tree object. |
size |
If set to TRUE draws clades proportional to number of taxa. If FALSE, draws clades that are of same size. (default=TRUE) |
backbone |
If set to TRUE return backbone tree, else returns a regular tree with dropped branches. (default=TRUE) |
Value
A backbone tree with
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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